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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=gDRcore
_pkgver=1.0.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Processing functions and interface to process and analyze drug dose-response data"
arch=(x86_64)
url="https://bioconductor.org/packages/${_pkgname}"
license=(Artistic2.0)
depends=(
r-biocparallel
r-bumpymatrix
r-checkmate
r-data.table
r-futile.logger
r-gdrutils
r-multiassayexperiment
r-purrr
r-s4vectors
r-stringr
r-summarizedexperiment
)
checkdepends=(
r-gdrimport
r-gdrtestdata
r-qs
r-testthat
)
optdepends=(
r-biocstyle
r-gdrimport
r-gdrstyle
r-gdrtestdata
r-iranges
r-knitr
r-pkgbuild
r-qs
r-testthat
r-yaml
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('76f729e9fce669107120d0ec73c32bfc')
sha256sums=('8eb4527eac26056bed31d02e29703623c11f69505c4224674abe7fa8b6bf05a1')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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