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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=gDRutils
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A package with helper functions for processing drug response data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocparallel
r-bumpymatrix
r-checkmate
r-data.table
r-drc
r-jsonlite
r-jsonvalidate
r-multiassayexperiment
r-s4vectors
r-stringr
r-summarizedexperiment
)
checkdepends=(
r-gdrtestdata
r-qs
r-testthat
r-yaml
)
optdepends=(
r-biocmanager
r-biocstyle
r-futile.logger
r-gdrstyle
r-gdrtestdata
r-iranges
r-knitr
r-lintr
r-purrr
r-qs
r-rcmdcheck
r-rmarkdown
r-testthat
r-yaml
r-scales
r-mockery
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('b5d35b8fcda56b7fdea1aa550d77d5f7')
b2sums=('75cfa08bb72330795b62e10e3f0da5dd205a9d11eaf2f6c4e6c9cc26b698bbb27fa7b76f2e236494e3ee49a95a8e99dabb79080bf918212415b14f90b47185ff')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
_check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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