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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=gDRutils
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A package with helper functions for processing drug response data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocparallel
r-bumpymatrix
r-checkmate
r-data.table
r-drc
r-jsonlite
r-jsonvalidate
r-multiassayexperiment
r-s4vectors
r-stringr
r-summarizedexperiment
)
checkdepends=(
r-gdrtestdata
r-qs
r-testthat
r-yaml
)
optdepends=(
r-biocmanager
r-biocstyle
r-futile.logger
r-gdrstyle
r-gdrtestdata
r-iranges
r-knitr
r-lintr
r-purrr
r-qs
r-rcmdcheck
r-rmarkdown
r-testthat
r-yaml
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6fd781aed5ab1373abdd3824f7fd56be')
b2sums=('0344bab38c3cec803dbf934dd16dcfa8e75d567067e5d48a965cfb4e09574549d46adee6975c75249dbe673664bf9ddacfb85a1be2837af99ae27f2c3f277150')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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