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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GeneStructureTools
_pkgver=1.24.0
pkgname=r-${_pkgname,,}
pkgver=1.24.0
pkgrel=1
pkgdesc='Tools for spliced gene structure manipulation and analysis'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('BSD')
depends=(
r
r-biostrings
r-bsgenome.mmusculus.ucsc.mm10
r-data.table
r-genomicranges
r-gviz
r-iranges
r-plyr
r-rtracklayer
r-s4vectors
r-stringdist
r-stringr
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('dd704fb44675d1fd33acb5b92b9aba9d19d2a122f1d58459b104c2a31b9036a6')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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