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# Maintainer: peippo <christoph+aur@christophfink.com>
# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
# Contributor: Grey Christoforo <first name at last name dot net>
_bcname=GenomeInfoDb
_bcver=1.34.2
pkgname=r-${_bcname,,}
pkgver=${_bcver//[:-]/.}
pkgrel=1
pkgdesc="Utilities for manipulating chromosome names, including modifying them to follow a particular naming style"
arch=(any)
url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
license=(Artistic-2.0)
depends=(
"r>=4.0.0"
"r-biocgenerics>=0.37.0"
"r-s4vectors>=0.25.12"
"r-iranges>=2.13.12"
"r-rcurl"
"r-genomeinfodbdata"
)
optdepends=(
"r-genomicranges"
"r-rsamtools"
"r-genomicalignments"
"r-genomicfeatures"
"r-txdb.dmelanogaster.ucsc.dm3.ensgene"
"r-bsgenome"
"r-bsgenome.scerevisiae.ucsc.saccer2"
"r-bsgenome.celegans.ucsc.ce2"
"r-bsgenome.hsapiens.ncbi.grch38"
"r-runit"
"r-biocstyle"
"r-knitr"
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
b2sums=("4bfb7cc27dc420586208133480a2479748ede743f25d2d1a3295cc1d77d13ef8f1fb54794a0cd24d523cf1c33572135e77202923ddd4217d69414caf4e27030e")
build() {
R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
if [[ -f "${_cranname}/LICENSE" ]]; then
install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
fi
}
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