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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GenomicDataCommons
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=1.22.0
pkgrel=3
pkgdesc='NIH / NCI Genomic Data Commons Access'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-dplyr
r-genomicranges
r-httr
r-iranges
r-jsonlite
r-magrittr
r-rappdirs
r-readr
r-rlang
r-tibble
r-xml2
)
optdepends=(
r-biocparallel
r-biocstyle
r-data.table
r-dt
r-genomicalignments
r-ggplot2
r-knitr
r-listviewer
r-maftools
r-r.utils
r-rmarkdown
r-rsamtools
r-testthat
r-txdb.hsapiens.ucsc.hg38.knowngene
r-variantannotation
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('81a15a8a4ac4c562d95556de43aee7b18c81b2c429f33d68019daa1ff682f373')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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