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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=GenomicPlot
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Plot profiles of next generation sequencing data in genomic features"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-biocgenerics
r-circlize
r-complexheatmap
r-cowplot
r-dplyr
r-edger
r-genomation
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggplot2
r-ggplotify
r-ggpubr
r-ggsci
r-ggsignif
r-iranges
r-plyranges
r-rcas
r-rsamtools
r-rtracklayer
r-scales
r-tidyr
r-txdbmaker
r-venndiagram
r-viridis
)
optdepends=(
r-annotationdbi
r-biobase
r-biocstyle
r-knitr
r-r.utils
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6427ba00460ed3545974ecbfdf27fc41')
b2sums=('7e59cfb32d04cbf279b10e0a1e10c39c167ccd84fcda959f2cce387376824e5f2271cb4e351dc654da515664fe1c3c5d86b539ec37ab7c2209ae39626712abd6')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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