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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=GenomicPlot
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Plot profiles of next generation sequencing data in genomic features"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-biocgenerics
r-circlize
r-complexheatmap
r-cowplot
r-dplyr
r-edger
r-genomation
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggplot2
r-ggplotify
r-ggpubr
r-ggsci
r-ggsignif
r-iranges
r-plyranges
r-rcas
r-rsamtools
r-rtracklayer
r-scales
r-tidyr
r-txdbmaker
r-venndiagram
r-viridis
)
optdepends=(
r-annotationdbi
r-biobase
r-biocstyle
r-knitr
r-r.utils
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6d6c5cab15be11a455add8e6e2ab31dd')
b2sums=('525cbd5fed167ebf40e77359264b4e196927d5772264c5bf9cad5cd4b37276d4dbcbb31cbe0020bdac0f6273d7df62293e800e506ab2e7162a987bc938635f50')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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