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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GenVisR
_pkgver=1.29.3
pkgname=r-${_pkgname,,}
pkgver=1.29.3
pkgrel=3
pkgdesc='Genomic Visualizations in R'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationdbi
r-biocgenerics
r-biomart
r-biostrings
r-bsgenome
r-data.table
r-dbi
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-gridextra
r-gtable
r-gtools
r-iranges
r-plyr
r-reshape2
r-rsamtools
r-scales
r-variantannotation
r-viridis
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.hsapiens.ucsc.hg38
r-formatr
r-knitr
r-rmarkdown
r-rmysql
r-roxygen2
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
r-txdb.hsapiens.ucsc.hg38.knowngene
r-vdiffr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e2fed67a3560219b741b10701150377e616aee5e542a0b30a70dc979656f0c63')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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