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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GEOexplorer
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="GEOexplorer: a webserver for gene expression analysis and visualisation"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(GPL3)
depends=(
r-biobase
r-car
r-dt
r-edger
r-enrichr
r-factoextra
r-geoquery
r-ggplot2
r-heatmaply
r-htmltools
r-httr
r-impute
r-knitr
r-limma
r-markdown
r-pheatmap
r-plotly
r-r.utils
r-readxl
r-scales
r-shiny
r-shinybusy
r-shinycssloaders
r-shinyheatmaply
r-stringr
r-sva
r-umap
r-xfun
r-xml
r-xml2
)
checkdepends=(
r-testthat
)
optdepends=(
r-rmarkdown
r-testthat
r-usethis
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('213a1b499ce1d0640b267c8fb41e3204')
sha256sums=('fce2f86eb58a9ba5892e33f9d4c31d6b05a129c16096e2ba021d8ab6b0d412ca')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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