blob: f92e5723b0ccff1b33fb7f2389432c320b5041b6 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GEOexplorer
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="a webserver for gene expression analysis and visualisation"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biobase
r-car
r-dt
r-edger
r-enrichr
r-factoextra
r-geoquery
r-ggplot2
r-heatmaply
r-htmltools
r-httr
r-impute
r-knitr
r-limma
r-markdown
r-pheatmap
r-plotly
r-r.utils
r-readxl
r-scales
r-shiny
r-shinybusy
r-shinycssloaders
r-shinyheatmaply
r-stringr
r-sva
r-umap
r-xfun
r-xml
r-xml2
)
checkdepends=(
r-testthat
)
optdepends=(
r-rmarkdown
r-testthat
r-usethis
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('213a1b499ce1d0640b267c8fb41e3204')
b2sums=('1b45228e579611570e26a5346345b806915542ebdae65d42e2f70413570dbeb426a7b65663ea7edf2e5925e1eb585f726b14e499049e39391ad7c6ccdcf31d48')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|