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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GeomxTools
_pkgver=3.16.0
pkgname=r-${_pkgname,,}
pkgver=3.16.0
pkgrel=1
pkgdesc='NanoString GeoMx Tools'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-biobase
r-biocgenerics
r-data.table
r-dplyr
r-envstats
r-ggally
r-ggplot2
r-lmertest
r-nanostringnctools
r-readxl
r-reshape2
r-rjson
r-rlang
r-s4vectors
r-seuratobject
r-stringr
)
optdepends=(
r-ggiraph
r-knitr
r-parallel
r-patchwork
r-rmarkdown
r-seurat
r-spatialdecon
r-spatialexperiment
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ebf42a8b442b1e756f20b454e1583fdabe0a9b599c608a4d87fd70babe4b17ef')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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