blob: 8c1ab276bf3018cabac77f4602b24339c28c8efd (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
|
# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=glmGamPoi
_pkgver=1.10.2
pkgname=r-${_pkgname,,}
pkgver=1.10.2
pkgrel=1
pkgdesc='Fit a Gamma-Poisson Generalized Linear Model'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-beachmat
r-biocgenerics
r-delayedarray
r-delayedmatrixstats
r-hdf5array
r-matrixgenerics
r-matrixstats
r-rcpp
r-rcpparmadillo
r-rlang
r-singlecellexperiment
r-summarizedexperiment
)
optdepends=(
r-beachmat
r-bench
r-biocparallel
r-biocstyle
r-deseq2
r-edger
r-ggplot2
r-knitr
r-limma
r-mass
r-matrix
r-muscdata
r-rmarkdown
r-scran
r-statmod
r-tenxpbmcdata
r-testthat
r-zoo
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('59fd6e365c01d0fa576574d56d1e5d5a08946cefa614d2da4b699a0edbc712c6')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|