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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=HiCool
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Processing Hi-C raw data within R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-basilisk
r-biocio
r-dplyr
r-genomicranges
r-hicexperiment
r-interactionset
r-iranges
r-plotly
r-reticulate
r-rmarkdown
r-rmdformats
r-s4vectors
r-sessioninfo
r-stringr
r-vroom
)
optdepends=(
r-annotationhub
r-biocfilecache
r-biocstyle
r-hicontacts
r-hicontactsdata
r-knitr
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('04aa2ef16336d5c43fc0a02291ba7887')
b2sums=('d56c592e447c857715e4a78bb1adde4b5ff7103f5b4f8d60ea2ca6fb98c0d8010ccd24ccf56c7cf698c025eb006c0b64030a2ba7f33ab10009caf700f8f7fb43')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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