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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=hiReadsProcessor
_pkgver=1.42.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Functions to process LM-PCR reads from 454/Illumina data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocgenerics
r-biocparallel
r-biostrings
r-dplyr
r-genomicalignments
r-genomicranges
r-hiannotator
r-pwalign
r-readxl
r-soniclength
)
optdepends=(
r-knitr
r-markdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('209c5291932b6ef2978cb534f008d458')
b2sums=('a1cf12213c45906df2ca38df885a05af94dcdd0fde9f9532797d557c878bb22567c0b62366c90b3f66aab1240345558d4b894f5416448c3a3b86cdd281919e68')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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