PKGBUILD


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# system requirements: BLAT, UCSC hg18 in 2bit format for BLAT
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=hiReadsProcessor
_pkgver=1.38.0
pkgname=r-${_pkgname,,}
pkgver=1.38.0
pkgrel=1
pkgdesc='Functions to process LM-PCR reads from 454/Illumina data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
  r
  r-biocgenerics
  r-biocparallel
  r-biostrings
  r-dplyr
  r-genomicalignments
  r-genomicranges
  r-hiannotator
  r-readxl
  r-soniclength
)
optdepends=(
  r-knitr
  r-markdown
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ba8924a92f80f6aefa9f64070d5806428c15bd8430410ffdc94de54130246f36')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: