PKGBUILD


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44

# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=infinityFlow
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=1.18.0
pkgrel=1
pkgdesc='Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
  r
  r-biobase
  r-flowcore
  r-generics
  r-gtools
  r-matlab
  r-pbapply
  r-png
  r-raster
  r-uwot
  r-xgboost
)
optdepends=(
  r-e1071
  r-glmnetutils
  r-keras
  r-knitr
  r-rmarkdown
  r-tensorflow
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('009c8edef3d857ec60090acc1e28d2f63fc5823a6d781036ab4a7084cd3c7d0f')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: