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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=INTACT
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Integrate TWAS and Colocalization Analysis for Gene Set Enrichment Analysis"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(GPL3)
depends=(
r-bdsmatrix
r-numderiv
r-squarem
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d8646f4acb0cbb31ccf53a672818be40')
sha256sums=('80b1dec3b9af56241eb28e453ea0a0057716f264cc4a35611ef1cb5fa03ff52b')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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