PKGBUILD


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# Maintainer: peippo <christoph+aur@christophfink.com>
# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
# Contributor: Grey Christoforo <first name at last name dot net>

_bcname=IRanges
_bcver=2.30.0
pkgname=r-${_bcname,,}
pkgver=${_bcver//[:-]/.}
pkgrel=1
pkgdesc="Foundation of integer range manipulation in Bioconductor"
arch=(i686 x86_64)
url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
license=(Artistic-2.0)
depends=(
    "r>=4.0.0"
	"r-biocgenerics>=0.39.2"
	"r-s4vectors>=0.33.3"
)
optdepends=(
    r-xvector
	r-genomicranges
	r-rsamtools
	r-genomicalignments
	r-genomicfeatures
	r-bsgenome.celegans.ucsc.ce2
	r-pasillabamsubset
	r-runit
	r-biocstyle
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
sha256sums=("1331cf39cab3d0e2233247bb6e9d439e0e804c2a3336c103cb195fb2802ddd41")

build() {
    R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
}

package() {
    install -dm0755 "${pkgdir}/usr/lib/R/library"
    cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"

    if [[ -f "${_cranname}/LICENSE" ]]; then
        install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
    fi
}