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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=iSEEhub
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="iSEE for the Bioconductor ExperimentHub"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(Artistic2.0)
depends=(
r-annotationhub
r-biocmanager
r-dt
r-experimenthub
r-isee
r-rintrojs
r-s4vectors
r-shiny
r-shinydashboard
r-shinyjs
r-singlecellexperiment
r-summarizedexperiment
)
checkdepends=(
r-nullrangesdata
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-knitr
r-nullrangesdata
r-refmanager
r-rmarkdown
r-sessioninfo
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6ebb32da66242f608b83522fca1d9a62')
sha256sums=('fcdfb6869261ce9571414904286a4b46f4a0be6df3770c75d7a22dd9d84e0899')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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