PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=lefser
_pkgver=1.10.1
pkgname=r-${_pkgname,,}
pkgver=1.10.1
pkgrel=1
pkgdesc='R implementation of the LEfSE method for microbiome biomarker discovery'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
  r
  r-coin
  r-ggplot2
  r-summarizedexperiment
)
optdepends=(
  r-biocstyle
  r-covr
  r-curatedmetagenomicdata
  r-knitr
  r-pkgdown
  r-rmarkdown
  r-testthat
  r-withr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('840968de7ad8bec3d2ab696721f7d991628d133b82f314addc9e7dbff45ad5c5')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: