blob: 8bf964baa98277adda8c5c06815f0c2a00225664 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=lemur
_pkgver=1.0.5
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Latent Embedding Multivariate Regression"
arch=(x86_64)
url="https://bioconductor.org/packages/${_pkgname}"
license=(MIT)
depends=(
blas
r-biocgenerics
r-biocneighbors
r-delayedmatrixstats
r-glmgampoi
r-harmony
r-hdf5array
r-irlba
r-limma
r-matrixgenerics
r-matrixstats
r-rcpp
r-rlang
r-s4vectors
r-singlecellexperiment
r-summarizedexperiment
r-vctrs
)
makedepends=(
r-rcpparmadillo
)
checkdepends=(
r-edger
r-testthat
)
optdepends=(
r-biocstyle
r-dplyr
r-edger
r-knitr
r-rmarkdown
r-testthat
r-tidyverse
r-uwot
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d6ad01367e439d6e55960148c94f3a37')
sha256sums=('404872c1445449b5bc268054627e456a1d074f3c05f3cacf78da2572ead1e980')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
|