blob: 65b0a89d79c3f0265db5a112512ff13044c19941 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=M3Drop
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Michaelis-Menten Modelling of Dropouts in single-cell RNASeq"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-or-later')
depends=(
r-bbmle
r-gplots
r-hmisc
r-irlba
r-matrixstats
r-numderiv
r-rcolorbrewer
r-reldist
r-scater
r-statmod
)
optdepends=(
r-biobase
r-knitr
r-m3dexampledata
r-rocr
r-seurat
r-singlecellexperiment
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('2eb3595426495eeddb5fdd1461ad9450')
b2sums=('f98989819f739f9fec82c05992aab3a4e222c105e301b6bff4acf50093cd90f53e155929051addc6d17b01378a6f81308928c388915d20a9f61c937cb00aa65a')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|