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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MADSEQ
_pkgver=1.30.0
pkgname=r-${_pkgname,,}
pkgver=1.30.0
pkgrel=1
pkgdesc='Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biostrings
r-bsgenome
r-bsgenome.hsapiens.ucsc.hg19
r-coda
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-iranges
r-preprocesscore
r-rjags
r-rsamtools
r-rtracklayer
r-s4vectors
r-summarizedexperiment
r-variantannotation
r-vcfr
r-vgam
r-zlibbioc
)
optdepends=(
r-knitr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a79276c5404bb5cc30c73cccbe2e5ac56243b3383b53465212742b6dd1e3252c')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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