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# system requirements: GNU make
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=maftools
_pkgver=2.18.0
pkgname=r-${_pkgname,,}
pkgver=2.18.0
pkgrel=1
pkgdesc='Summarize, Analyze and Visualize MAF Files'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-data.table
r-rcolorbrewer
r-rhtslib
r-zlibbioc
make
r-dnacopy
)
optdepends=(
r-berryfunctions
r-biostrings
r-bsgenome
r-bsgenome.hsapiens.ucsc.hg19
r-curl
r-genomicranges
r-iranges
r-knitr
r-mclust
r-multiassayexperiment
r-nmf
r-pheatmap
r-r.utils
r-raggedexperiment
r-rmarkdown
r-s4vectors
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ea8d5c1d97a0d1b7d5ab172ee93b89c234918874b98ae3b2ff8d8ed02da6bc08')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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