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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=marinerData
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="ExperimentHub data for the mariner package"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-experimenthub
)
checkdepends=(
r-testthat
)
optdepends=(
r-experimenthubdata
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('8a0b56752221a8fed1273889c6cc8bc8')
b2sums=('74e987f99a8b26dccd3ccb9cc3a9bc8d72c006903f694d2faf608a1050e6ad8d8fc6c7aea7afd65110f4dced712adda168e05b70810ec95d2c16f533065a721f')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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