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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=mashr
_pkgver=0.2.79
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Multivariate Adaptive Shrinkage"
arch=(x86_64)
url="https://cran.r-project.org/package=${_pkgname}"
license=(BSD)
depends=(
blas
gsl
lapack
r-abind
r-ashr
r-assertthat
r-mvtnorm
r-plyr
r-rcpp
r-rmeta
r-softimpute
)
makedepends=(
r-rcpparmadillo
r-rcppgsl
)
checkdepends=(
r-testthat
)
optdepends=(
r-corrplot
r-ebnm
r-flashier
r-kableextra
r-knitr
r-profmem
r-rebayes
r-rmarkdown
r-testthat
)
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('3ddec828c72b1d1b594f35a3934e7f88')
sha256sums=('158b3670277523fa3168a46a9d80a1f6dd7063091b54584cd170eb70bf85f886')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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