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# Maintainer: peippo <christoph+aur@christophfink.com>
# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
# Contributor: Grey Christoforo <first name at last name dot net>
_cranname=matrixStats
_cranver=1.3.0
pkgname=r-${_cranname,,}
pkgdesc="Functions that Apply to Rows and Columns of Matrices (and to Vectors)"
url="https://cran.r-project.org/package=${_cranname}"
license=("Artistic2.0")
pkgver=${_cranver//[:-]/.}
pkgrel=1
arch=("i686" "x86_64")
depends=(
"r>=2.12.0"
)
optdepends=(
"r-base64enc"
"r-ggplot2"
"r-knitr"
"r-markdown"
"r-microbenchmark"
"r-r.devices"
"r-r.rsp"
"r-utils"
)
# The unittests for `r-matrixstats` have multiple circular
# dependency chains.
# As such, the tests can not be run on first build.
# While R packages from CRAN, generally, are well-tested
# before they are released, in some situations, you want to
# have thorough testing on your own end.
# To run the tests, first build this package without `check()`
# (i.e., as-is) to bootstrap `r-matrixstats`. Then, on subsequent builds,
# (assumining you have a local repository that is accessible from
# the build chroot), uncomment the lines defining `checkdepends`, below,
# as well as the `check()` function further down
# checkdepends=(
# "${optdepends[@]}"
# "qpdf"
# "r-rcmdcheck"
# )
source=("https://cran.r-project.org/src/contrib/${_cranname}_${_cranver}.tar.gz")
b2sums=("79aaa70c60d1965c979c7e482d1fefc504a61516a20f26497088b7e59efa8a95a51243e4c91b474f0334860dc5e48d324705b608e65ff9657a3aee6bc1dabcc3")
build() {
mkdir -p "${srcdir}/build/"
R CMD INSTALL ${_cranname}_${_cranver}.tar.gz -l "${srcdir}/build/"
}
# check() {
# export R_LIBS="build/"
# R CMD check --no-manual "${_cranname}"
# }
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${srcdir}/build/${_cranname}" "${pkgdir}/usr/lib/R/library"
if [[ -f "${_cranname}/LICENSE" ]]; then
install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
fi
}
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