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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=metaseqR2
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-or-later')
depends=(
r-absseq
r-biobase
r-biocgenerics
r-biocparallel
r-biomart
r-biostrings
r-corrplot
r-deseq2
r-dss
r-dt
r-edaseq
r-edger
r-genefilter
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-gplots
r-harmonicmeanp
r-heatmaply
r-htmltools
r-httr
r-iranges
r-jsonlite
r-limma
r-locfit
r-log4r
r-magrittr
r-nbpseq
r-pander
r-qvalue
r-rmarkdown
r-rmdformats
r-rsamtools
r-rsqlite
r-rtracklayer
r-s4vectors
r-stringr
r-summarizedexperiment
r-survcomp
r-txdbmaker
r-venndiagram
r-vsn
r-yaml
r-zoo
)
optdepends=(
r-biocmanager
r-biocstyle
r-bsgenome
r-knitr
r-rmysql
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('a406f8ff6d42c145b6b2bc0982d9faa4')
b2sums=('1967c3caf3b366a9ec9f26a7e154a8313b7d809e6784179df3d9d230c15dadd3f1012873f3b7c49a20b11e4f11fa9a1be30f6aa12343bcb73aa5e36e18fc743f')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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