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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=metaseqR2
_pkgver=1.14.0
pkgname=r-${_pkgname,,}
pkgver=1.14.0
pkgrel=1
pkgdesc='An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-absseq
r-bayseq
r-biobase
r-biocgenerics
r-biocparallel
r-biomart
r-biostrings
r-corrplot
r-deseq2
r-dss
r-dt
r-edaseq
r-edger
r-genefilter
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-gplots
r-harmonicmeanp
r-heatmaply
r-htmltools
r-httr
r-iranges
r-jsonlite
r-limma
r-locfit
r-log4r
r-magrittr
r-nbpseq
r-pander
r-qvalue
r-rmarkdown
r-rmdformats
r-rsamtools
r-rsqlite
r-rtracklayer
r-s4vectors
r-stringr
r-summarizedexperiment
r-survcomp
r-venndiagram
r-vsn
r-yaml
r-zoo
)
optdepends=(
r-biocmanager
r-bsgenome
r-knitr
r-rmysql
r-runit
r-tcc
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('c590809d04fdcd8b7f3de13f531cfbc60b2aa47ab697926b1fcfc8683652e9e9')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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