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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=methylPipe
_pkgver=1.36.0
pkgname=r-${_pkgname,,}
pkgver=1.36.0
pkgrel=1
pkgdesc='Base resolution DNA methylation data analysis'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-biostrings
r-data.table
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-gplots
r-gviz
r-iranges
r-marray
r-rsamtools
r-s4vectors
r-summarizedexperiment
)
optdepends=(
r-bsgenome.hsapiens.ucsc.hg18
r-knitr
r-methylseekr
r-txdb.hsapiens.ucsc.hg18.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('002150c0d490ad15fad6efacb9cce108a26af198470d69c2a4a265099c34deab')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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