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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=methylumi
_pkgver=2.58.1
pkgname=r-${_pkgname,,}
pkgver=2.58.1
pkgrel=1
pkgdesc='Handle Illumina methylation data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotate
r-annotationdbi
r-biobase
r-biocgenerics
r-fdb.infiniummethylation.hg19
r-genefilter
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-illuminaio
r-iranges
r-matrixstats
r-minfi
r-reshape2
r-s4vectors
r-scales
r-summarizedexperiment
)
optdepends=(
r-biostrings
r-fdb.infiniummethylation.hg18
r-homo.sapiens
r-illuminahumanmethylation450kanno.ilmn12.hg19
r-knitr
r-lattice
r-limma
r-lumi
r-mass
r-matrixstats
r-parallel
r-rtracklayer
r-sqn
r-tcgamethylation450k
r-xtable
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('2fab9ebd42f5792f50a6bd20207a10c44b0797199805083077a42d42d523ae34')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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