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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=midasHLA
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=1.8.0
pkgrel=1
pkgdesc='R package for immunogenomics data handling and association analysis'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-assertthat
r-broom
r-dplyr
r-formattable
r-hardyweinberg
r-kableextra
r-knitr
r-magrittr
r-multiassayexperiment
r-qdaptools
r-rlang
r-s4vectors
r-stringi
r-summarizedexperiment
r-tibble
)
optdepends=(
r-broom.mixed
r-cowplot
r-devtools
r-ggplot2
r-ggpubr
r-rmarkdown
r-seqinr
r-survival
r-testthat
r-tidyr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('b447ab024cb66ead2295fd5f0b73cbd3cf53e72ab160add238b5d7d1c8d95d09')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENCE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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