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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=minfi
_pkgver=1.48.0
pkgname=r-${_pkgname,,}
pkgver=1.48.0
pkgrel=1
pkgdesc='Analyze Illumina Infinium DNA methylation arrays'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-beanplot
r-biobase
r-biocgenerics
r-biocparallel
r-biostrings
r-bumphunter
r-data.table
r-delayedarray
r-delayedmatrixstats
r-genefilter
r-genomeinfodb
r-genomicranges
r-geoquery
r-hdf5array
r-illuminaio
r-iranges
r-limma
r-mclust
r-nor1mix
r-preprocesscore
r-quadprog
r-rcolorbrewer
r-reshape
r-s4vectors
r-siggenes
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-digest
r-flowsorted.blood.450k
r-illuminahumanmethylation450kanno.ilmn12.hg19
r-illuminahumanmethylation450kmanifest
r-knitr
r-minfidata
r-minfidataepic
r-rmarkdown
r-runit
r-tools
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('1d2871388bbdd7b40185a660a683523b2ec856775944576eaeb56e64e46f948e')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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