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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MinimumDistance
_pkgver=1.50.0
pkgname=r-${_pkgname,,}
pkgver=1.50.0
pkgrel=1
pkgdesc='A Package for De Novo CNV Detection in Case-Parent Trios'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biobase
r-biocgenerics
r-data.table
r-dnacopy
r-ff
r-foreach
r-genomeinfodb
r-genomicranges
r-iranges
r-matrixgenerics
r-matrixstats
r-oligoclasses
r-s4vectors
r-summarizedexperiment
r-vanillaice
)
optdepends=(
r-bsgenome.hsapiens.ucsc.hg18
r-bsgenome.hsapiens.ucsc.hg19
r-dosnow
r-human610quadv1bcrlmm
r-runit
r-snow
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('5bc86a16d5c5340fbb093dff4a9abee7f84dedfa0c6650aaf351d0f070f60031')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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