PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=ModCon
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=2
pkgdesc="Modifying splice site usage by changing the mRNP code, while maintaining the genetic code"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only AND LGPL-3.0-only')
depends=(
  perl
  r-data.table
)
optdepends=(
  r-dplyr
  r-knitr
  r-rmarkdown
  r-shiny
  r-shinycssloaders
  r-shinydashboard
  r-shinyfiles
  r-shinyjs
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('bdb0634e890917a01325519cf6e53f90')
b2sums=('69036a052f11ca4369c4b25a60ad246b63cd2600943dbc621c3061c81864717ee0e43e9290dafcb48665f17f8850eab8c203d447d52f344dd493dd8ceeec4109')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}