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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=msgbsR
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=1.28.0
pkgrel=1
pkgdesc='msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-bsgenome
r-easyrnaseq
r-edger
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggbio
r-ggplot2
r-iranges
r-plyr
r-r.utils
r-rsamtools
r-s4vectors
r-summarizedexperiment
)
optdepends=(
r-bsgenome.rnorvegicus.ucsc.rn6
r-roxygen2
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('f4a5c57c5059fe45c8783c140d7c109c7ce7f76805d044e51c28b269c362cb1a')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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