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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MSstats
_pkgver=4.14.2
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
blas
r-checkmate
r-data.table
r-ggplot2
r-ggrepel
r-gplots
r-htmltools
r-limma
r-lme4
r-marray
r-msstatsconvert
r-plotly
r-preprocesscore
r-rcpp
r-statmod
)
makedepends=(
r-rcpparmadillo
)
optdepends=(
r-biocstyle
r-covr
r-knitr
r-markdown
r-rmarkdown
r-tinytest
r-mockery
r-kableextra
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('f6eacc4ec087edae8c13a00325f840b1')
b2sums=('faa2c816700ec60f4e9c2495baea35b3d83c7a94bea3f1ba14483abdaa6c8be990a8aa2b9e58a5df7cfe5e87a31edc86956a61ec764f71f0ddc2efd25d59ab11')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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