PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=MSstats
_pkgver=4.8.2
pkgname=r-${_pkgname,,}
pkgver=4.8.2
pkgrel=1
pkgdesc='Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
  r
  r-checkmate
  r-data.table
  r-ggplot2
  r-ggrepel
  r-gplots
  r-limma
  r-lme4
  r-marray
  r-msstatsconvert
  r-preprocesscore
  r-rcpp
  r-rcpparmadillo
  r-statmod
)
optdepends=(
  r-biocstyle
  r-covr
  r-knitr
  r-markdown
  r-rmarkdown
  r-tinytest
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('80e1b87d99031627d36af138d589bcdbde0ea6974c8fb9ab45539c8a4ceb4a10')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: