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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=multiSight
_pkgver=1.7.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=2
pkgdesc="Multi-omics Classification, Functional Enrichment and Network Inference analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('CECILL-2.1')
depends=(
r-anylib
r-biosigner
r-caret
r-clusterprofiler
r-config
r-deseq2
r-dplyr
r-dt
r-easypubmed
r-enrichplot
r-ggnewscale
r-golem
r-htmltools
r-igraph
r-infotheo
r-metap
r-mixomics
r-networkd3
r-ppcor
r-r6
r-reactomepa
r-rmarkdown
r-rwikipathways
r-shiny
r-shinydashboard
r-stringr
)
optdepends=(
r-attempt
r-biocstyle
r-knitr
r-markdown
r-org.mm.eg.db
r-processx
r-rlang
r-testthat
)
source=("https://bioconductor.org/packages/3.17/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('441d8e6ab1b689928f6f623551fe1459')
b2sums=('53069027a9cbc203591ba8a0a5309a90f900385691c0d49692bfa8e1bdf7651f2e573032f6c37b9627e58bbec40a3a022c1d637e4be040bdd59045622cf00dfb')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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