blob: 8b1dd0e79813b9bc4c8430203e2bef3a0e9c7e24 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
|
# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=NanoMethViz
_pkgver=2.2.0
pkgname=r-${_pkgname,,}
pkgver=2.2.0
pkgrel=1
pkgdesc='Visualise methlation data from Oxford Nanopore sequencing'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Apache')
depends=(
r
r-annotationdbi
r-assertthat
r-biocsingular
r-bsseq
r-cpp11
r-data.table
r-dplyr
r-e1071
r-forcats
r-fs
r-genomicranges
r-ggplot2
r-ggthemes
r-glue
r-limma
r-patchwork
r-purrr
r-rcpp
r-readr
r-rlang
r-rsamtools
r-rsqlite
r-s4vectors
r-scales
r-scico
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr
r-withr
r-zlibbioc
gcc
)
optdepends=(
r-covr
r-dss
r-homo.sapiens
r-knitr
r-mus.musculus
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('818a7b18c15ebe791f70b30badaafccda0a1e9de2d285de0f75d9576e11fb363')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|