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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=nanotatoR
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=1.16.0
pkgrel=1
pkgdesc='Next generation structural variant annotation and classification'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('custom')
depends=(
r
r-annotationdbi
r-curl
r-dplyr
r-genomicranges
r-hash
r-httr
r-knitr
r-openxlsx
r-org.hs.eg.db
r-rentrez
r-rlang
r-stringr
r-testthat
r-tidyverse
r-varfrompdb
r-xml
r-xml2r
)
optdepends=(
r-rmarkdown
r-yaml
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('cbf85356b28e2b7438dc2b3f25b72783515caef89f6590c1fd1bad5be7a576d4')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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