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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=netboost
_pkgver=2.14.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Network Analysis Supported by Boosting"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
bash
gzip
make
onetbb
perl
r-biocstyle
r-colorspace
r-dynamictreecut
r-impute
r-r.utils
r-rcpp
r-rcppparallel
r-wgcna
)
optdepends=(
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
"fix-build.patch")
md5sums=('24b404583b12464b5cc270a6cd1a0cd9'
'8ec6c48c11194032999b97b498934753')
b2sums=('df0b4ec7b911a9b34c6ac6082424f40c76d42fec3829a475b57c7c163d55049674e7c9e3bb7af8462868022da3a2b661558fbac4120a5f3fe1c52263df441f37'
'e607da2818fcc96d110e579ddbf7ac221aea127fbc730a1d6ac5946d608915fe3ef4af39e7b678a08c165c55d629b44df0147ecf6b758f1ff7a4715421374eab')
prepare() {
# disable CPU feature detection, fix build flags
patch -Np1 -i fix-build.patch
cd "$_pkgname"
autoconf
}
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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