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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ngsReports
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=1.12.0
pkgrel=1
pkgdesc='Load FastqQC reports and other NGS related files'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('custom')
depends=(
r
r-biocgenerics
r-biostrings
r-checkmate
r-dplyr
r-dt
r-forcats
r-ggdendro
r-ggplot2
r-lifecycle
r-lubridate
r-pander
r-plotly
r-readr
r-reshape2
r-rmarkdown
r-scales
r-stringr
r-tibble
r-tidyr
r-tidyselect
r-zoo
)
optdepends=(
r-biocstyle
r-cairo
r-knitr
r-testthat
r-truncnorm
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('d07bccaa02746c204037d2ca4bb145a8953ee57dd0a2cc04519ebcdf320f9d75')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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