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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=octad
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Open Cancer TherApeutic Discovery (OCTAD)"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationhub
r-biobase
r-data.table
r-deseq2
r-dplyr
r-edaseq
r-edger
r-experimenthub
r-foreach
r-ggplot2
r-gsva
r-htmlwidgets
r-httr
r-limma
r-magrittr
r-octad.db
r-plotly
r-qpdf
r-reshape2
r-rfast
r-rhdf5
r-ruvseq
r-s4vectors
)
optdepends=(
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('9f3c8eb0aa1c5749327058dc94a72758')
b2sums=('c06924d9fe7179804eb892bc357c663763dd2c9fec8e322706fac3ac4155062e3098690b23fcc97977235fb68e7e26d2d5dd074ad990fd8000b5bfdb2173122e')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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