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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=PanViz
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Integrating Multi-Omic Network Data With Summay-Level GWAS Data"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(Artistic2.0)
depends=(
r-colorspace
r-data.table
r-dplyr
r-easycsv
r-futile.logger
r-igraph
r-magrittr
r-rcolorbrewer
r-rentrez
r-rlang
r-stringr
r-tibble
r-tidyr
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-networkd3
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('5d5ced4ee7d68f57367aed30633f29e0')
sha256sums=('a05161ea6299e1426430c604c4e6ce050aa4b528b8d32c32f5fe43d8522b52a5')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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