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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=PathoStat
_pkgver=1.32.0
pkgname=r-${_pkgname,,}
pkgver=1.32.0
pkgrel=1
pkgdesc='PathoStat Statistical Microbiome Analysis Package'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-ape
r-biocstyle
r-complexheatmap
r-corpcor
r-deseq2
r-devtools
r-dplyr
r-dt
r-edger
r-ggplot2
r-glmnet
r-gmodels
r-knitr
r-limma
r-matrixstats
r-phyloseq
r-plotly
r-plyr
r-rcolorbrewer
r-rentrez
r-reshape2
r-rocr
r-scales
r-shiny
r-shinyjs
r-tidyr
r-vegan
r-webshot
r-xml
)
optdepends=(
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('6b647025c91d34445fe3c5f4fe345e7074dc060b6f99fbd1c3502f9e182b05d9')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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