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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=PDATK
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=1.12.0
pkgrel=1
pkgdesc='Pancreatic Ductal Adenocarcinoma Tool-Kit'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-biocgenerics
r-biocparallel
r-caret
r-clusterrepro
r-consensusclusterplus
r-coregx
r-data.table
r-dplyr
r-genefu
r-ggplot2
r-ggplotify
r-igraph
r-matrixgenerics
r-matrixstats
r-multiassayexperiment
r-piano
r-plyr
r-proc
r-rcolorbrewer
r-reportroc
r-rlang
r-s4vectors
r-scales
r-summarizedexperiment
r-survcomp
r-survminer
r-switchbox
r-verification
)
optdepends=(
r-biocstyle
r-hdf5array
r-knitr
r-msigdbr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('db8e024f2e8380df0b4de1eba14d96b53d2d84d8f86b70c12a19a49a206f2f1d')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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