blob: e4e33d812b37cacec8912dff0f69fea419fa757c (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=phantasusLite
_pkgver=1.0.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Loading and annotation RNA-Seq counts matrices"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biobase
r-data.table
r-httr
r-rhdf5client
r-stringr
)
checkdepends=(
r-geoquery
r-testthat
)
optdepends=(
r-biocstyle
r-geoquery
r-knitr
r-rhdf5
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('5fe0e101ac53a89dd49e077d5fb4c07d')
b2sums=('c28a7ab9128ccff247761208e759b9c462e08cbb2e50d3057fe1e0e2aa2a801260dfc4ddb31be6fc9f1ea295b91f423ead3365064d6296aeaad2c5c16666394c')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
|