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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=PhosR
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=1.6.0
pkgrel=1
pkgdesc='A set of methods and tools for comprehensive analysis of phosphoproteomics data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-circlize
r-dendextend
r-dplyr
r-e1071
r-ggally
r-ggdendro
r-ggplot2
r-ggpubr
r-ggtext
r-igraph
r-limma
r-network
r-pcamethods
r-pheatmap
r-preprocesscore
r-rcolorbrewer
r-reshape2
r-rlang
r-ruv
r-s4vectors
r-summarizedexperiment
r-tidyr
)
optdepends=(
r-annotate
r-biocstyle
r-calibrate
r-cluer
r-directpa
r-knitr
r-org.mm.eg.db
r-org.rn.eg.db
r-reactome.db
r-rgl
r-rmarkdown
r-sna
r-stringr
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e24af46b24fd6144d042e94b1e09696f91e3d538bbb32a43540b968a0ac9f865')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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