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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=plotgardener
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=1.10.0
pkgrel=1
pkgdesc='Coordinate-Based Genomic Visualization Package for R'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-curl
r-data.table
r-dplyr
r-genomeinfodb
r-genomicranges
r-ggplotify
r-iranges
r-plyranges
r-purrr
r-rcolorbrewer
r-rcpp
r-rlang
r-strawr
r-withr
)
optdepends=(
r-annotationdbi
r-annotationhub
r-bsgenome
r-bsgenome.hsapiens.ucsc.hg19
r-complexheatmap
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-interactionset
r-knitr
r-org.hs.eg.db
r-pdftools
r-plotgardenerdata
r-png
r-rmarkdown
r-rtracklayer
r-scales
r-showtext
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('8a2744ca6818d9615a11d03a7fa10aa3b4aff9379e6bf0b9b8cb9138fcd7fdae')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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