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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=plyinteractions
_pkgver=1.0.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Extending tidy verbs to genomic interactions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-dplyr
r-genomeinfodb
r-genomicranges
r-interactionset
r-iranges
r-plyranges
r-rlang
r-s4vectors
r-tibble
r-tidyselect
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocparallel
r-biocstyle
r-biostrings
r-bsgenome.mmusculus.ucsc.mm10
r-covr
r-hicontactsdata
r-knitr
r-refmanager
r-rmarkdown
r-rtracklayer
r-scales
r-sessioninfo
r-testthat
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e072613b18768f43d832eaa32354bbc9')
b2sums=('e926a8959c1801f3b303e7cf19d4226f43fbc4ac5667fe46d0dc20a0fe2a2d555103cda51723c5b98284c4b713cbf721ee5620c970a85b54290a26c46ef12bd4')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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